add a Dockerfile #3
Open
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
It seems to work for me ... test with: docker build \ --build-arg VCS_REF=`git rev-parse --short HEAD` \ -t <user>/structural-pipeline:latest . Fetching the FSL key seems a little unreliable, I'm not sure why. If you get an error, try just running again. see #2
|
(Dockerfile shamelessly copied from MIRTK) |
|
Sweet! BTW I myself have no permissions to merge. Either wait for @amakropoulos's reply or get permissions from in-house if your part of BioMedIA/dHCP. |
I made it urge people to do a build in docker, perhaps that's not wise
|
I added some notes to the README. It should probably use |
fsl5 has "fsl5.0-" in front of all exe names the dockerfile needs to get root shell to run the fsl init script
|
It seems to be working well now. I'm going to merge to master on my fork, I'll leave this here. The README has some notes -- tldr: build the pipeline to a docker image with: Run the pipeline on the file I'll try and get OpenMOLE using this next. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
It seems to work for me ... test with:
Fetching the FSL key seems a little unreliable, I'm not sure why. If you
get an error, try just running again.
see #2